Cis-acting element prediction
WebPrediction of cis-element with experimantally varidated examples. To estimate gene regulatory schemes, cis-elements in regions 200-bp upstream of TSS were predicted by … WebJan 21, 2024 · Cis-acting element prediction showed that PvCML contained elements related to growth and development, response to abiotic stress and hormones. Moreover, the majority of PvCMLs showed different ...
Cis-acting element prediction
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WebDatabase of motifs found in plant cis-acting regulatory DNA elements, all from previously published reports. It covers vascular plants only. Place contains a useful signal scan … WebMay 27, 2024 · Cis-acting elements prediction. Analysis of cis-acting elements in the VvWRKYs promoters provided the basis for the understanding of potential regulation …
WebDec 23, 2024 · First, we have proposed an economical and efficient calculation method to predict a subclass of auxin response genes that combined the methods in recent similar … WebIn silico analysis of the rare variants and identification of cis-acting elements was determined using Human Splicing Finder (HSF), ESE finder, RESCUE-ESE and through Exon- Identity Element (EIEs) prediction software suits, combined with various algorithms to identify the effect of variations in splicing motifs; (3) Results: Screening of VSX1 ...
WebThis resource can be used to query co-expression data, GO and cis-regulatory elements annotations, submit user-defined gene sets for motif analysis for Arabidopsis and … WebPlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Besides the transcription motifs found on a sequence, it also offers a link to the EMBL entry that contains the full gene sequence as well as a description of the conditions in which a motif becomes functional. The information on these sites is given by ...
WebA cis -acting element for the sulfur response is reported for the Arabidopsis SULTR1;1 sulfate transporter gene ( Maruyama-Nakashita et al., 2005 ). The sulfur-responsive … city built grand rapidsWebThe 1972 bp promoter sequence of VqMYB15 was submitted to PlantCARE for element prediction analysis. Citation 24 The results showed that the promoter sequence contained a large number of stress-response elements. ... There are some cis-acting elements that are associated with light in the promoter regions of genes. For example, it is known that ... city built into mountainWebAug 26, 2024 · PIN-formed (PIN) proteins are important auxin carriers that participate in the polar distribution of auxin in plants. In this study, 16 ZaPIN genes were identified from the whole genome of Zanthoxylum armatum DC. The physicochemical properties and structure of PIN proteins were determined, and the gene sequences and promoter regions were … city built on ancient byzantiumWebJan 28, 2024 · The cis-acting elements analysis showed that a lot of the cis-acting elements were implicated in stress and hormone response. Melon seedlings were treated with salt, low temperature, drought, and ABA, and then tissue-specific analysis of CCDs expression were performed on the root, stem, upper leaf, middle leaf, female flower, … dick\\u0027s sporting goods golf club trade inWebCis-acting element prediction showed that there were many photoresponsive elements upstream of the cotton GGPS gene promoter. In the process of plant evolution, complex mechanisms can be formed to sense light intensity and other factors and affect a series of developmental events, such as seed germination and seedling formation [ 45 ]. city built on hillsWebAdditionally, cis-acting elements related to hormone, abiotic stress and light were found in the promoter region of JmjC genes. Several JmjC genes were regulated under abscisic acid (ABA) and methyl jasmonate (MeJA) ... cis-acting element prediction of JmjC gene promoter in moso bamboo. The 2 kb sequences upstream of the start codon ... dick\u0027s sporting goods golf grip installationWebWe present a computational pipeline to predict cis-regulatory elements composing results based on different algorithms: Clover, Cluster-Buster, an own implementation of human/rat/mouse sequence identity and our ITB algorithm. The procedure uses information from the human genome sequence, NCBI gene annotations, verified eukaryotic … dick\u0027s sporting goods golf galaxy